ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1299.00 0.36 9.05 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 22880.00 6.40 159.45 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 156.00 0.04 1.09 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 187.00 0.05 1.30 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 487.00 0.14 3.39 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 7085.00 1.98 49.37 72.88 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 9335.00 2.61 65.05 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1487.00 0.42 10.36 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 1147.00 0.32 7.99 99.14 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 29459.00 8.24 205.29 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 364.00 0.10 2.54 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 5515.00 1.54 38.43 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 9834.00 2.75 68.53 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 438.00 0.12 3.05 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 163.00 5.55 1.14 100.0 FTX-219 lncRNA Karpas-422 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 1881.00 64.09 13.11 79.33 FTX-219 lncRNA Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 903.00 8.67 6.29 21.9 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 404.00 3.88 2.82 66.12 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 463.00 4.45 3.23 38.81 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 3221.00 30.94 22.45 78.1 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1431.00 13.74 9.97 91.26 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 271.00 2.60 1.89 100.0 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 541.00 5.20 3.77 100.0 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 502.00 4.82 3.50 100.0 CTC1-214 protein coding Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 298.00 0.62 2.08 80.11 ENST00000651540 lncRNA Karpas-422 (Cell line)