ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 25.00 0.02 0.17 100.0 MIR106AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 97.13 0.08 0.68 68.4 MIR106AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 5402.00 40.56 37.65 99.52 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 380.00 2.85 2.65 96.69 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 87.00 0.65 0.61 100.0 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 141.00 1.06 0.98 93.38 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 55.00 0.41 0.38 100.0 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 61.00 0.46 0.43 19.81 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 613.00 4.60 4.27 72.46 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 1588.00 11.92 11.07 80.94 SNHG14-224 lncRNA Karpas-422 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 18484.06 71.75 128.81 88.51 5S_rRNA.20-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 2883.00 15.02 20.09 100.0 HSPA9-211 retained intron Karpas-422 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 10644.00 55.44 74.18 96.49 HSPA9-211 retained intron Karpas-422 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 35.00 94.59 0.24 100.0 DNM3OS-205 lncRNA Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 57.00 0.02 0.40 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 14182.00 3.96 98.83 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 76.00 0.02 0.53 43.43 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 15851.00 4.43 110.46 99.39 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 1733.00 0.48 12.08 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 153.00 0.04 1.07 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 341.00 0.10 2.38 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 161886.00 45.26 1128.15 99.77 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1927.00 0.54 13.43 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 14430.00 4.03 100.56 100.0 GAS5-230 retained intron Karpas-422 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 18172.00 5.08 126.64 100.0 GAS5-230 retained intron Karpas-422 (Cell line)