ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 306.00 13.28 2.13 100.0 RPS11-206 retained intron Karpas-422 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 4.00 44.44 0.03 80.0 CARMN-209 lncRNA Karpas-422 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 5062.00 28.12 35.28 100.0 ENST00000602478 lncRNA Karpas-422 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 35.00 14.06 0.24 100.0 PPFIA1P1-201 processed pseudogene Karpas-422 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 408.00 96.91 2.84 100.0 MIR98-201 miRNA Karpas-422 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 3140.00 97.06 21.88 100.0 MIR15A-201 miRNA Karpas-422 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 823.00 41.65 5.74 100.0 SNHG21-206 retained intron Karpas-422 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 131.00 33.50 0.91 100.0 SNORD11B-201 snoRNA Karpas-422 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2440.00 59.86 17.00 100.0 SNORD91B-201 snoRNA Karpas-422 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 23705.00 74.90 165.20 92.46 SNORD91A-201 snoRNA Karpas-422 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 49.00 48.51 0.34 100.0 MIR486-1-201 miRNA Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 936.00 3.00 6.52 35.94 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 655.00 2.10 4.56 100.0 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 3595.00 11.53 25.05 100.0 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 18790.00 60.24 130.94 97.97 NOP56-219 retained intron Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 131.00 0.75 0.91 51.98 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 16.42 0.09 0.11 56.61 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 326.00 1.88 2.27 100.0 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1556.00 8.96 10.84 100.0 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 504.00 2.90 3.51 100.0 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 162.00 0.93 1.13 55.29 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 14.60 0.08 0.10 50.35 RNA5-8SN2-201 rRNA Karpas-422 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 87.00 87.88 0.61 100.0 MIR7974-201 miRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1143.00 0.18 7.97 100.0 U2.3-201 snRNA Karpas-422 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 9124.28 1.44 63.59 41.93 U2.3-201 snRNA Karpas-422 (Cell line)