ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 9248.50 32.64 64.45 59.33 RPL17-214 retained intron Karpas-422 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 142.00 0.02 0.99 100.0 SNORD43-201 snoRNA Karpas-422 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 931310.00 99.06 6490.11 99.81 SNORD43-201 snoRNA Karpas-422 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 313.00 0.03 2.18 100.0 SNORD43-201 snoRNA Karpas-422 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 266.00 69.09 1.85 100.0 MIR151B-201 miRNA Karpas-422 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 6481.00 11.05 45.16 100.0 SNORD3A-201 snoRNA Karpas-422 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1601.00 28.69 11.16 100.0 SNORD92-201 snoRNA Karpas-422 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 8580.00 47.91 59.79 100.0 NSRP1-214 protein coding Karpas-422 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 6243.00 34.86 43.51 84.82 NSRP1-214 protein coding Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 40.00 3.41 0.28 100.0 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 42.00 3.58 0.29 84.0 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 347.00 29.61 2.42 79.77 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 102.00 8.70 0.71 95.33 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 18.00 1.54 0.13 51.43 MIR23AHG-201 lncRNA Karpas-422 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 26.00 33.33 0.18 100.0 ODAD3-204 nonsense mediated decay Karpas-422 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 739.00 6.13 5.15 100.0 VMP1-217 retained intron Karpas-422 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 77.00 0.64 0.54 100.0 VMP1-217 retained intron Karpas-422 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 7163.00 59.41 49.92 66.82 VMP1-217 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 3417.00 0.13 23.81 100.0 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1016228.91 40.06 7081.89 48.11 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1431438.61 56.43 9975.41 59.6 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 84211.00 3.32 586.85 88.98 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 1563.00 0.06 10.89 100.0 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 10.00 0.00 0.07 100.0 C19orf48P-203 retained intron Karpas-422 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 96.00 4.16 0.67 100.0 RPS11-206 retained intron Karpas-422 (Cell line)