ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1.00 7.14 0.01 100.0 MIR497HG-207 lncRNA Karpas-422 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 4291.00 98.67 29.90 99.19 MIR22HG-212 lncRNA Karpas-422 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 43295.00 67.88 301.71 71.9 SNORD53B-201 snoRNA Karpas-422 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 203.00 0.32 1.41 18.8 SNORD53B-201 snoRNA Karpas-422 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 877.00 1.38 6.11 81.2 SNORD53B-201 snoRNA Karpas-422 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 34.00 22.22 0.24 100.0 ENST00000578036 lncRNA Karpas-422 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 6690.00 80.87 46.62 100.0 RPL23A-207 protein coding Karpas-422 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 929.00 93.65 6.47 100.0 MIR744-201 miRNA Karpas-422 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 944.00 84.44 6.58 100.0 MIR378C-201 miRNA Karpas-422 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 35981.00 51.01 250.74 78.78 MIR142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 844.00 1.20 5.88 100.0 MIR142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 19133.00 27.13 133.33 55.74 MIR142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1395.00 2.49 9.72 100.0 SNORD3C-201 snoRNA Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 13.30 0.02 0.09 60.46 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 7.49 0.01 0.05 41.63 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 40796.00 62.43 284.30 71.54 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 22540.00 34.49 157.08 85.39 RPL23A-208 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 254.00 0.27 1.77 23.5 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 590.00 0.62 4.11 6.64 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 2377.00 2.50 16.56 100.0 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 65228.00 68.67 454.56 99.43 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 8611.00 9.06 60.01 98.77 RPL17-211 retained intron Karpas-422 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 1.00 12.50 0.01 100.0 ENST00000582320 lncRNA Karpas-422 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 985.00 3.48 6.86 100.0 RPL17-214 retained intron Karpas-422 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 6425.57 22.67 44.78 45.21 RPL17-214 retained intron Karpas-422 (Cell line)