ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 72.00 0.75 0.50 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 258.00 2.67 1.80 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 657.00 6.81 4.58 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 7439.00 77.07 51.84 100.0 SNHG14-220 retained intron Karpas-422 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1316.00 98.43 9.17 100.0 TEKT4P2-201 transcribed unprocessed pseudogene Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 386.00 0.62 2.69 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 56223.00 90.21 391.81 98.84 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 47.00 0.08 0.33 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1003.00 1.61 6.99 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 56.00 0.09 0.39 100.0 RPL4-202 retained intron Karpas-422 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 281.00 0.73 1.96 100.0 ENST00000563103 lncRNA Karpas-422 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 1105.00 2.05 7.70 100.0 RPL4-207 retained intron Karpas-422 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 41367.00 76.68 288.28 100.0 RPL4-207 retained intron Karpas-422 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 3639.00 13.93 25.36 67.19 ENST00000565336 lncRNA Karpas-422 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 15194.00 58.17 105.88 84.59 ENST00000565336 lncRNA Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1845.00 4.25 12.86 100.0 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1875.00 4.32 13.07 100.0 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 59.00 0.14 0.41 100.0 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 36139.00 83.34 251.85 99.11 RBMX-210 retained intron Karpas-422 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 760.00 5.62 5.30 100.0 RPL4-214 retained intron Karpas-422 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 5963.00 44.12 41.55 100.0 RPL4-214 retained intron Karpas-422 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 472.00 2.92 3.29 100.0 POLG-DT-202 lncRNA Karpas-422 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 5205.39 32.21 36.28 67.97 POLG-DT-202 lncRNA Karpas-422 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3880.02 24.01 27.04 48.7 POLG-DT-202 lncRNA Karpas-422 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 751.00 24.75 5.23 100.0 ENST00000570843 lncRNA Karpas-422 (Cell line)