ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 13.00 86.67 0.02 100.0 MEG8-228 lncRNA GM23338 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 713.00 10.36 0.86 100.0 SNHG14-254 lncRNA GM23338 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 2220.00 22.48 2.66 100.0 SNHG14-261 lncRNA GM23338 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 3777.00 38.24 4.53 95.48 SNHG14-261 lncRNA GM23338 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 7.00 0.02 0.01 100.0 LIMD1-AS1-204 lncRNA GM23338 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 19.00 0.05 0.02 100.0 LIMD1-AS1-204 lncRNA GM23338 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 4624.00 11.43 5.55 89.21 LIMD1-AS1-204 lncRNA GM23338 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 45.00 81.82 0.05 100.0 MIR99AHG-262 lncRNA GM23338 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 6.00 10.91 0.01 100.0 MIR99AHG-262 lncRNA GM23338 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 2665.00 71.14 3.20 100.0 SNHG14-270 lncRNA GM23338 (Cell line)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 87.00 0.05 0.10 100.0 SNHG14-275 lncRNA GM23338 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 151.00 75.50 0.18 94.38 MIR9-2HG-225 lncRNA GM23338 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 553.00 7.69 0.66 100.0 SNHG14-278 lncRNA GM23338 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 712.00 9.90 0.85 98.61 SNHG14-278 lncRNA GM23338 (Cell line)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 1.00 20.00 0.00 100.0 MEG8-234 lncRNA GM23338 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 2062.00 86.38 2.47 100.0 SNHG17-252 lncRNA GM23338 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 4815.00 8.44 5.78 39.43 SNHG14-288 lncRNA GM23338 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 43015.00 75.36 51.62 92.65 SNHG14-288 lncRNA GM23338 (Cell line)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 2.00 4.88 0.00 100.0 SNHG14-295 lncRNA GM23338 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 3.00 8.82 0.00 100.0 MEG8-240 lncRNA GM23338 (Cell line)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 18.00 0.28 0.02 100.0 SNHG14-303 lncRNA GM23338 (Cell line)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 2.00 4.08 0.00 100.0 SNHG14-306 lncRNA GM23338 (Cell line)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 12.00 24.49 0.01 100.0 SNHG14-306 lncRNA GM23338 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 5648.00 10.37 6.78 100.0 ENST00000666735 lncRNA GM23338 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 2534.00 4.65 3.04 100.0 ENST00000666735 lncRNA GM23338 (Cell line)