ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 4669.00 5.86 5.60 100.0 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 23706.00 29.74 28.45 46.6 ENST00000651540 lncRNA GM23338 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 4.00 0.23 0.00 100.0 MIRLET7A1HG-203 lncRNA GM23338 (Cell line)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 6.00 75.00 0.01 100.0 MEG8-225 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 776542.00 92.01 931.89 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 68.00 0.01 0.08 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 527.00 0.06 0.63 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 163.00 0.02 0.20 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 29324.00 3.47 35.19 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 19087.00 2.26 22.91 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 2.00 0.00 0.00 100.0 SNHG29-232 lncRNA GM23338 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 145.00 0.18 0.17 100.0 SNHG14-234 lncRNA GM23338 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 26264.00 33.24 31.52 98.99 SNHG14-234 lncRNA GM23338 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 175.00 0.22 0.21 100.0 SNHG14-234 lncRNA GM23338 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 2583.00 3.27 3.10 100.0 SNHG14-234 lncRNA GM23338 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 26740.00 33.84 32.09 100.0 SNHG14-234 lncRNA GM23338 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 10548.00 13.35 12.66 99.74 SNHG14-234 lncRNA GM23338 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 152277.00 72.72 182.74 99.4 ENST00000655317 lncRNA GM23338 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 26028.00 12.43 31.24 100.0 ENST00000655317 lncRNA GM23338 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 1727.00 0.82 2.07 1.1 ENST00000655317 lncRNA GM23338 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 2406.00 1.15 2.89 100.0 ENST00000655317 lncRNA GM23338 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 297.00 3.54 0.36 44.93 LINC01962-202 lncRNA GM23338 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 2712.00 32.31 3.25 100.0 LINC01962-202 lncRNA GM23338 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 1217.00 14.50 1.46 100.0 LINC01962-202 lncRNA GM23338 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 8133.00 19.21 9.76 99.89 SNHG14-241 lncRNA GM23338 (Cell line)