ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 1.00 10.00 0.00 100.0 MEG8-242 lncRNA GM23338 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 3470.63 17.39 4.16 22.87 SNHG14-312 lncRNA GM23338 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 12335.61 61.82 14.80 81.27 SNHG14-312 lncRNA GM23338 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 151.00 0.76 0.18 100.0 SNHG14-312 lncRNA GM23338 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 5.00 62.50 0.01 71.43 MEG8-244 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 270.00 0.00 0.32 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4.00 0.00 0.00 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 7728.00 0.14 9.27 61.89 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 351.33 0.01 0.42 64.35 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 5164.00 0.09 6.20 73.82 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 3715661.00 66.97 4459.00 93.67 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 155.00 0.00 0.19 63.01 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 137264.00 2.47 164.72 99.84 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 2145.00 0.04 2.57 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 194711.00 3.51 233.66 98.44 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 767.00 0.01 0.92 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 87.00 0.00 0.10 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 943.00 0.02 1.13 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 21623.00 0.39 25.95 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 784.00 0.01 0.94 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 19.00 0.00 0.02 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 42545.00 0.77 51.06 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 3308.00 0.06 3.97 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 590.00 0.01 0.71 100.0 SNHG1-248 lncRNA GM23338 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 385546.00 6.95 462.68 99.19 SNHG1-248 lncRNA GM23338 (Cell line)