ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 273.00 2.79 0.33 100.0 NOP56-217 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 83.00 0.10 0.10 83.84 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 69394.00 83.11 83.28 98.95 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1770.00 2.12 2.12 100.0 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 1948.00 2.33 2.34 85.74 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 16.00 0.02 0.02 16.16 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1934.00 2.32 2.32 100.0 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 90.00 0.11 0.11 100.0 RABGGTB-213 protein coding CDS not defined GM23338 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 18480.00 89.22 22.18 100.0 GNL3-211 retained intron GM23338 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 373.00 1.80 0.45 100.0 GNL3-211 retained intron GM23338 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 4487.00 66.44 5.38 100.0 RPL5-205 retained intron GM23338 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 159.00 2.35 0.19 100.0 RPL5-205 retained intron GM23338 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 5215.00 32.22 6.26 100.0 ZBED9-AS1-201 lncRNA GM23338 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 5407.00 61.38 6.49 100.0 RPS3A-206 retained intron GM23338 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 29438.00 95.19 35.33 100.0 COX7C-203 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 91.00 0.26 0.11 63.64 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 6.00 0.02 0.01 100.0 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 7234.85 20.50 8.68 21.69 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 25160.96 71.30 30.19 76.15 RACK1-229 protein coding GM23338 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 18013.00 16.86 21.62 61.84 RACK1-230 retained intron GM23338 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 84360.00 78.98 101.24 87.29 RACK1-230 retained intron GM23338 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 21.00 2.02 0.03 100.0 RNA5SP486-201 rRNA pseudogene GM23338 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 113.00 46.50 0.14 100.0 SCARNA5-201 scaRNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 99.00 0.15 0.12 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 114.00 0.17 0.14 46.15 RNY4-201 misc RNA GM23338 (Cell line)