ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 4579.00 6.71 5.50 72.37 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 21414.00 31.39 25.70 92.45 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 16412.00 24.06 19.70 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 5389.00 7.90 6.47 96.15 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 78.00 0.11 0.09 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 9.00 0.01 0.01 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 2558.00 3.75 3.07 64.84 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 2127.00 3.12 2.55 88.66 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 364.00 0.53 0.44 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 39.00 0.06 0.05 100.0 RNY4-201 misc RNA GM23338 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 81.00 95.29 0.10 98.78 MIR3142HG-201 lncRNA GM23338 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 4796.00 54.90 5.76 100.0 SNHG6-204 retained intron GM23338 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 2273.00 12.33 2.73 100.0 MIR151A-201 miRNA GM23338 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 14279.00 77.44 17.14 90.28 MIR151A-201 miRNA GM23338 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 3203.00 98.68 3.84 100.0 DENND3-221 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 160.00 0.01 0.19 100.0 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 698.00 0.03 0.84 100.0 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 664.00 0.03 0.80 100.0 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 31.00 0.00 0.04 100.0 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 147.00 0.01 0.18 64.47 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1205.00 0.05 1.45 90.4 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1758.00 0.07 2.11 70.32 WDR74-204 protein coding GM23338 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 81.00 0.00 0.10 35.53 WDR74-204 protein coding GM23338 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1640.00 57.71 1.97 100.0 HSPA8-211 retained intron GM23338 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 32.00 3.14 0.04 100.0 SCARNA9-201 lncRNA GM23338 (Cell line)