ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 1249.00 21.96 1.50 100.0 RPL7A-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 440.00 7.74 0.53 100.0 RPL7A-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 149.00 2.62 0.18 100.0 RPL7A-206 protein coding CDS not defined GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 165.00 0.03 0.20 100.0 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 28.00 0.00 0.03 100.0 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 278127.00 49.45 333.77 99.51 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 272338.00 48.42 326.82 92.94 RPL21-209 retained intron GM23338 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 662.00 0.12 0.79 100.0 RPL21-209 retained intron GM23338 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 39.00 36.79 0.05 100.0 GABRE-209 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 166355.00 92.73 199.64 99.84 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 101.00 0.06 0.12 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 6.00 0.00 0.01 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 4563.00 2.54 5.48 96.8 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 450.00 0.25 0.54 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 133.00 0.07 0.16 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 2.00 0.00 0.00 100.0 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 21.00 0.01 0.03 67.74 RPL13A-212 retained intron GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 15.00 0.07 0.02 100.0 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 15896.00 72.36 19.08 82.73 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 427.00 1.94 0.51 100.0 RPL7A-207 protein coding CDS not defined GM23338 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 772.00 0.95 0.93 100.0 RN7SL2-201 misc RNA GM23338 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 56723.00 69.61 68.07 99.25 RN7SL2-201 misc RNA GM23338 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 3.00 12.00 0.00 100.0 RGS11-208 retained intron GM23338 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 8576.00 87.52 10.29 99.64 NOP56-217 protein coding CDS not defined GM23338 (Cell line)