ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 1444.00 29.45 4.30 100.0 Y_RNA.14-201 misc RNA liver (Tissue)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 5970.00 26.85 17.80 100.0 SNORD115-34-201 snoRNA liver (Tissue)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 4043.00 32.20 12.05 100.0 RNU5E-1-201 snRNA liver (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 4.00 0.05 0.01 8.33 RNA5SP370-201 rRNA pseudogene liver (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 50.00 3.81 0.15 100.0 SNORA31-201 snoRNA liver (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 153.00 1.82 0.46 81.82 RNA5SP389-201 rRNA pseudogene liver (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 80.00 0.95 0.24 100.0 RNA5SP389-201 rRNA pseudogene liver (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 2292.00 27.23 6.83 99.01 RNA5SP389-201 rRNA pseudogene liver (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 71.00 0.84 0.21 100.0 RNA5SP389-201 rRNA pseudogene liver (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 2080.00 1.79 6.20 100.0 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 9142.00 7.88 27.25 75.1 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 10843.67 9.35 32.32 42.41 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 5336.00 4.60 15.91 80.95 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 5523.00 4.76 16.46 76.96 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 4185.00 3.61 12.48 66.67 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 588.00 0.51 1.75 100.0 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 5244.00 4.52 15.63 70.08 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 3806.00 3.28 11.35 41.9 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1064.74 0.92 3.17 53.67 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 3887.00 3.35 11.59 59.14 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 3913.00 3.37 11.66 100.0 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 16142.59 13.92 48.12 65.54 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 957.38 0.83 2.85 35.67 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 3285.00 2.83 9.79 46.7 RNU5A-1-201 snRNA liver (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 13450.00 74.10 40.09 100.0 SNORD114-14-201 snoRNA liver (Tissue)