ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 773.00 5.85 2.30 62.19 LINC02739-203 lncRNA liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 554.00 4.19 1.65 100.0 LINC02739-203 lncRNA liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 4772.00 36.12 14.23 100.0 LINC02739-203 lncRNA liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 256.00 1.94 0.76 100.0 LINC02739-203 lncRNA liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 470.00 3.56 1.40 37.81 LINC02739-203 lncRNA liver (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 3.00 30.00 0.01 100.0 MIR124-1HG-216 lncRNA liver (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 103.00 10.80 0.31 100.0 SNHG10-212 lncRNA liver (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 55964.40 55.05 166.83 57.78 SNHG19-202 lncRNA liver (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 40905.59 40.24 121.94 59.85 SNHG19-202 lncRNA liver (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 7.46 0.01 0.02 57.38 SNHG19-202 lncRNA liver (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 4.32 0.00 0.01 72.05 SNHG19-202 lncRNA liver (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 1983.00 17.97 5.91 100.0 MIR222HG-206 lncRNA liver (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 5642.00 51.14 16.82 74.1 MIR222HG-206 lncRNA liver (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 60.00 0.54 0.18 100.0 MIR222HG-206 lncRNA liver (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 4.00 1.37 0.01 100.0 RPSA-216 retained intron liver (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 376.00 3.20 1.12 88.26 MIR99AHG-370 lncRNA liver (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 10964.00 93.26 32.68 99.13 MIR99AHG-370 lncRNA liver (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 5813.00 94.80 17.33 100.0 HPS4-237 retained intron liver (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 7050.00 87.12 21.02 100.0 MEG8-253 lncRNA liver (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 2399.00 25.12 7.15 100.0 MEG9-206 lncRNA liver (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1052.00 11.02 3.14 100.0 MEG9-206 lncRNA liver (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 1639.00 17.16 4.89 100.0 MEG9-206 lncRNA liver (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 338.00 12.38 1.01 100.0 DNAJC5-203 nonsense mediated decay liver (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1003.00 27.43 2.99 100.0 ENST00000707189 TEC liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 695.00 0.11 2.07 100.0 MIR17HG-214 lncRNA liver (Tissue)