ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 49.00 27.84 0.15 100.0 HCN2-201 protein coding liver (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 299.00 90.61 0.89 100.0 SLC49A4-201 protein coding liver (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 207.00 6.73 0.62 100.0 ATP5MC3-201 protein coding liver (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 770.00 90.16 2.30 100.0 CDC25A-201 protein coding liver (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 700.00 84.95 2.09 100.0 BLOC1S4-201 protein coding liver (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 446.00 11.26 1.33 100.0 ATAD5-201 protein coding liver (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 583.00 13.43 1.74 100.0 SLITRK5-201 protein coding liver (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 37.00 48.05 0.11 100.0 HASPIN-201 protein coding liver (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 2137.00 85.69 6.37 100.0 PRR14L-201 protein coding liver (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 4174.00 95.56 12.44 100.0 ATG101-201 protein coding liver (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 2313.00 69.61 6.90 100.0 PRICKLE1-201 protein coding liver (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 163.00 95.32 0.49 97.02 MIR133A2-201 miRNA liver (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 54.00 37.50 0.16 100.0 PBLD-204 protein coding liver (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 76465.00 90.98 227.94 99.15 MIRLET7BHG-201 lncRNA liver (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 3997.00 4.76 11.92 94.6 MIRLET7BHG-201 lncRNA liver (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 152.00 1.71 0.45 62.55 MIR375-201 miRNA liver (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 8604.00 96.74 25.65 98.5 MIR375-201 miRNA liver (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 5471.00 9.45 16.31 100.0 MIR30E-201 miRNA liver (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 49593.00 85.69 147.84 100.0 MIR30E-201 miRNA liver (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 2539.00 69.30 7.57 100.0 MIR29A-201 miRNA liver (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 939.00 86.86 2.80 100.0 MIR345-201 miRNA liver (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 101928.00 98.87 303.85 100.0 MIR16-2-201 miRNA liver (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 84.00 2.30 0.25 100.0 MIR340-201 miRNA liver (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 3437.00 94.01 10.25 100.0 MIR340-201 miRNA liver (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 8551.00 86.64 25.49 100.0 MIR107-201 miRNA liver (Tissue)