ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 83359.00 33.19 248.49 89.35 SNHG14-315 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3225.00 0.92 9.61 98.02 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 962.00 0.27 2.87 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 91775.87 26.07 273.58 34.15 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 3776.00 1.07 11.26 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 736.00 0.21 2.19 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 219061.46 62.23 653.02 69.87 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7169.00 2.04 21.37 85.29 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 382.00 0.11 1.14 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3901.00 1.11 11.63 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 185.00 0.05 0.55 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 4.00 0.00 0.01 100.0 SNHG5-273 lncRNA liver (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 2296.00 8.77 6.84 63.23 SNHG14-323 lncRNA liver (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 6732.00 0.23 20.07 61.55 MEG8-251 lncRNA liver (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 2756863.00 93.45 8218.20 98.0 MEG8-251 lncRNA liver (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 5301.00 0.18 15.80 53.43 MEG8-251 lncRNA liver (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 50122.00 1.70 149.41 85.22 MEG8-251 lncRNA liver (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 6003.00 0.20 17.89 100.0 MEG8-251 lncRNA liver (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 25008.00 63.66 74.55 86.05 SNHG14-336 lncRNA liver (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 12115.00 30.84 36.11 60.67 SNHG14-336 lncRNA liver (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 8598.00 59.94 25.63 91.57 SNHG14-341 lncRNA liver (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 69.00 2.14 0.21 100.0 NCL-211 retained intron liver (Tissue)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2.00 0.23 0.01 100.0 NCL-216 retained intron liver (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1633.00 32.87 4.87 100.0 FMN2-209 protein coding CDS not defined liver (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 376.00 2.85 1.12 100.0 LINC02739-203 lncRNA liver (Tissue)