ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 252194.13 41.35 751.79 45.78 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 741.00 0.12 2.21 100.0 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 2534.00 0.42 7.55 100.0 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 331678.66 54.39 988.73 58.72 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 17016.00 2.79 50.72 100.0 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 623.00 0.10 1.86 100.0 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 3401.00 0.56 10.14 100.0 MIR17HG-214 lncRNA liver (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 2953.00 0.48 8.80 100.0 MIR17HG-214 lncRNA liver (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 7846.00 1.49 23.39 100.0 SNHG32-223 lncRNA liver (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 2151.00 0.41 6.41 100.0 SNHG32-223 lncRNA liver (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 725.00 0.14 2.16 100.0 SNHG32-223 lncRNA liver (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 4762.00 0.90 14.20 62.46 SNHG32-223 lncRNA liver (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 501564.00 95.30 1495.16 100.0 SNHG32-223 lncRNA liver (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 84422.00 83.95 251.66 98.53 SNHG32-227 lncRNA liver (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 6129.00 6.10 18.27 100.0 SNHG32-227 lncRNA liver (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 985.00 0.98 2.94 100.0 SNHG32-227 lncRNA liver (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 1487.00 1.48 4.43 100.0 SNHG32-227 lncRNA liver (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 200.00 58.48 0.60 100.0 B4GALT1-203 nonsense mediated decay liver (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 2065.00 2.84 6.16 100.0 ENST00000722183 lncRNA liver (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 40084.00 55.10 119.49 88.12 ENST00000722183 lncRNA liver (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 6287.00 8.64 18.74 100.0 ENST00000722183 lncRNA liver (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 15.00 83.33 0.04 100.0 MIR34BHG-202 lncRNA liver (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 871.00 63.81 2.60 75.94 THBS3-AS1-228 lncRNA liver (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 199.00 75.09 0.59 100.0 MIR200CHG-202 lncRNA liver (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 15.00 5.66 0.04 100.0 MIR200CHG-202 lncRNA liver (Tissue)