ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 107897.00 16.44 321.64 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 475.00 0.07 1.42 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 10805.00 1.65 32.21 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 22391.00 3.41 66.75 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 310.00 0.05 0.92 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 396.00 11.26 1.18 100.0 FTX-219 lncRNA liver (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 1616.00 45.94 4.82 84.12 FTX-219 lncRNA liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 113.00 1.39 0.34 25.98 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 449.00 5.51 1.34 39.8 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 1182.00 14.51 3.52 60.9 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 322.00 3.95 0.96 74.02 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1324.00 16.26 3.95 84.17 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 389.00 4.78 1.16 100.0 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 199.00 2.44 0.59 100.0 CTC1-214 protein coding liver (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1180.00 14.49 3.52 100.0 CTC1-214 protein coding liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1324.00 1.80 3.95 82.08 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 5654.00 7.68 16.85 98.97 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 1496.00 2.03 4.46 100.0 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 3126.00 4.25 9.32 63.91 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 1383.00 1.88 4.12 100.0 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 604.00 0.82 1.80 100.0 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 1017.00 1.38 3.03 100.0 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 1452.00 1.97 4.33 100.0 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1528.00 2.08 4.55 100.0 ENST00000651540 lncRNA liver (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 10295.00 13.99 30.69 66.88 ENST00000651540 lncRNA liver (Tissue)