ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 250515.36 43.10 746.79 44.03 C19orf48P-203 retained intron liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3862.00 0.66 11.51 92.57 C19orf48P-203 retained intron liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 178.00 0.03 0.53 100.0 C19orf48P-203 retained intron liver (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3.00 0.00 0.01 100.0 C19orf48P-203 retained intron liver (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 18.00 62.07 0.05 100.0 ENST00000597420 lncRNA liver (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 670.00 20.45 2.00 100.0 RPS11-206 retained intron liver (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 2105.00 64.26 6.28 100.0 RPS11-206 retained intron liver (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 36328.00 54.89 108.29 57.12 CARMN-209 lncRNA liver (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2381.00 26.95 7.10 100.0 ENST00000602478 lncRNA liver (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 33.00 9.40 0.10 100.0 PPFIA1P1-201 processed pseudogene liver (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 63612.00 67.86 189.63 100.0 SNORD114-21-201 snoRNA liver (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 7809.00 8.33 23.28 100.0 SNORD114-21-201 snoRNA liver (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 7696.00 32.26 22.94 100.0 SNORD115-40-201 snoRNA liver (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 9978.00 98.10 29.74 100.0 MIR98-201 miRNA liver (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 332182.00 93.89 990.23 100.0 SNORD113-5-201 snoRNA liver (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 3076.00 93.84 9.17 100.0 MIR15A-201 miRNA liver (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2905.00 77.63 8.66 100.0 MIR376C-201 miRNA liver (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 895.00 51.73 2.67 100.0 SNHG21-206 retained intron liver (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 429.00 40.90 1.28 100.0 SNORD11B-201 snoRNA liver (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 5550.00 75.12 16.54 100.0 SNORD91B-201 snoRNA liver (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 14560.00 62.34 43.40 74.32 SNORD91A-201 snoRNA liver (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 106063.00 46.32 316.17 96.47 MIR486-1-201 miRNA liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 18101.00 21.08 53.96 64.66 NOP56-219 retained intron liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1106.00 1.29 3.30 100.0 NOP56-219 retained intron liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 2949.00 3.43 8.79 100.0 NOP56-219 retained intron liver (Tissue)