ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 15167.00 15.76 45.21 100.0 ENST00000582320 lncRNA liver (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 22333.00 23.21 66.57 100.0 ENST00000582320 lncRNA liver (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 5228.00 8.88 15.58 100.0 RPL17-214 retained intron liver (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 16320.71 27.73 48.65 38.25 RPL17-214 retained intron liver (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 31308.42 53.19 93.33 62.82 RPL17-214 retained intron liver (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 3182.00 0.19 9.49 100.0 SNORD43-201 snoRNA liver (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1642996.00 98.76 4897.77 99.91 SNORD43-201 snoRNA liver (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1682.00 0.10 5.01 100.0 SNORD43-201 snoRNA liver (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 452.00 56.71 1.35 100.0 MIR151B-201 miRNA liver (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 326.00 0.83 0.97 100.0 SNORD3A-201 snoRNA liver (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 21535.00 90.32 64.20 100.0 SNORD92-201 snoRNA liver (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 8142.00 60.35 24.27 100.0 NSRP1-214 protein coding liver (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3722.00 27.59 11.10 90.21 NSRP1-214 protein coding liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 75.00 0.93 0.22 100.0 MIR23AHG-201 lncRNA liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1109.00 13.82 3.31 88.58 MIR23AHG-201 lncRNA liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2294.00 28.59 6.84 71.71 MIR23AHG-201 lncRNA liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1161.00 14.47 3.46 84.19 MIR23AHG-201 lncRNA liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1153.00 14.37 3.44 77.07 MIR23AHG-201 lncRNA liver (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 26307.00 48.74 78.42 100.0 MIR122HG-201 lncRNA liver (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 36.00 34.95 0.11 100.0 ODAD3-204 nonsense mediated decay liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1719.00 1.46 5.12 100.0 VMP1-217 retained intron liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 536.00 0.46 1.60 100.0 VMP1-217 retained intron liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 81863.00 69.60 244.03 74.29 VMP1-217 retained intron liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 498.00 0.09 1.48 100.0 C19orf48P-203 retained intron liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 316040.47 54.38 942.12 61.93 C19orf48P-203 retained intron liver (Tissue)