ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 38.00 0.32 0.11 100.0 ENST00000554988 lncRNA liver (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 701.00 5.86 2.09 100.0 ENST00000554988 lncRNA liver (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 207.00 0.43 0.62 100.0 SNHG14-220 retained intron liver (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 793.00 1.63 2.36 100.0 SNHG14-220 retained intron liver (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 23031.00 47.47 68.66 100.0 SNHG14-220 retained intron liver (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 18947.00 39.05 56.48 100.0 SNHG14-220 retained intron liver (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 7182.00 99.35 21.41 100.0 TEKT4P2-201 transcribed unprocessed pseudogene liver (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 38.00 0.02 0.11 100.0 RPL4-202 retained intron liver (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 470.00 0.30 1.40 100.0 RPL4-202 retained intron liver (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 289.00 0.18 0.86 100.0 RPL4-202 retained intron liver (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 986.00 0.63 2.94 100.0 RPL4-202 retained intron liver (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 148621.00 94.26 443.04 99.19 RPL4-202 retained intron liver (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 2.00 0.01 0.01 100.0 ENST00000563103 lncRNA liver (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 31216.00 79.16 93.05 100.0 RPL4-207 retained intron liver (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 246.00 0.62 0.73 100.0 RPL4-207 retained intron liver (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 22791.00 63.24 67.94 92.65 ENST00000565336 lncRNA liver (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 6198.00 17.20 18.48 83.51 ENST00000565336 lncRNA liver (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 142052.00 81.13 423.46 85.65 RBMX-210 retained intron liver (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 947.00 0.54 2.82 100.0 RBMX-210 retained intron liver (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 385.00 0.22 1.15 100.0 RBMX-210 retained intron liver (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1680.00 0.96 5.01 100.0 RBMX-210 retained intron liver (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 3076.00 24.69 9.17 100.0 RPL4-214 retained intron liver (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 5661.00 45.45 16.88 100.0 RPL4-214 retained intron liver (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 9881.05 30.22 29.46 62.18 POLG-DT-202 lncRNA liver (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 8907.21 27.24 26.55 49.95 POLG-DT-202 lncRNA liver (Tissue)