ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 13790.00 7.60 41.11 78.44 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 28661.00 15.79 85.44 100.0 RNY4-201 misc RNA liver (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 996.00 75.40 2.97 86.76 MIR3142HG-201 lncRNA liver (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 11476.00 83.11 34.21 100.0 SNHG6-204 retained intron liver (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 27137.00 37.55 80.90 100.0 MIR151A-201 miRNA liver (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 36332.00 50.27 108.31 83.9 MIR151A-201 miRNA liver (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 4553.00 89.03 13.57 100.0 DENND3-221 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 26.00 0.01 0.08 100.0 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 59.00 0.02 0.18 69.41 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1456.00 0.40 4.34 73.39 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 26.00 0.01 0.08 30.59 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 131.00 0.04 0.39 74.01 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 429.00 0.12 1.28 100.0 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1158.00 0.32 3.45 100.0 WDR74-204 protein coding liver (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 211.00 0.06 0.63 100.0 WDR74-204 protein coding liver (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 30741.00 86.33 91.64 100.0 HSPA8-211 retained intron liver (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 603.00 12.15 1.80 100.0 SCARNA9-201 lncRNA liver (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 133945.00 95.86 399.29 100.0 TAF1D-215 retained intron liver (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 236.00 0.17 0.70 100.0 TAF1D-215 retained intron liver (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 913.00 6.19 2.72 100.0 HSPA8-215 retained intron liver (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 10771.00 73.05 32.11 100.0 HSPA8-215 retained intron liver (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 40.00 0.27 0.12 100.0 HSPA8-215 retained intron liver (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1273.00 35.13 3.79 100.0 RPS2-215 retained intron liver (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 90081.00 84.63 268.53 85.45 ENST00000548801 lncRNA liver (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 38.00 0.32 0.11 100.0 ENST00000554988 lncRNA liver (Tissue)