ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 557.00 1.70 1.66 100.0 POLG-DT-202 lncRNA liver (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 5474.00 58.49 16.32 100.0 ENST00000570843 lncRNA liver (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 272.00 57.14 0.81 100.0 MIR497HG-207 lncRNA liver (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 513154.00 99.30 1529.71 99.66 MIR22HG-212 lncRNA liver (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 719.00 1.30 2.14 69.33 SNORD53B-201 snoRNA liver (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 46030.00 83.47 137.22 86.49 SNORD53B-201 snoRNA liver (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 318.00 0.58 0.95 30.67 SNORD53B-201 snoRNA liver (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 1432.00 85.90 4.27 100.0 ENST00000578036 lncRNA liver (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 11104.00 92.16 33.10 100.0 RPL23A-207 protein coding liver (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2058.00 89.25 6.13 100.0 MIR744-201 miRNA liver (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 339.00 74.67 1.01 100.0 MIR378C-201 miRNA liver (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 527.00 2.43 1.57 100.0 MIR142HG-201 lncRNA liver (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 5042.00 23.23 15.03 37.11 MIR142HG-201 lncRNA liver (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 7310.00 33.68 21.79 52.95 MIR142HG-201 lncRNA liver (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 12353.00 32.90 36.82 100.0 SNORD3C-201 snoRNA liver (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 870.67 0.42 2.60 46.44 RPL23A-208 retained intron liver (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 120532.00 57.97 359.31 79.53 RPL23A-208 retained intron liver (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 81133.00 39.02 241.86 94.0 RPL23A-208 retained intron liver (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 1759.17 0.85 5.24 65.91 RPL23A-208 retained intron liver (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 49725.00 16.70 148.23 98.7 RPL17-211 retained intron liver (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4079.00 1.37 12.16 43.48 RPL17-211 retained intron liver (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 16001.00 5.38 47.70 30.8 RPL17-211 retained intron liver (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 245.00 0.08 0.73 100.0 RPL17-211 retained intron liver (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 219660.00 73.79 654.81 98.27 RPL17-211 retained intron liver (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 45166.00 46.94 134.64 87.2 ENST00000582320 lncRNA liver (Tissue)