ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 24281.00 81.67 72.38 100.0 GNL3-211 retained intron liver (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2069.00 6.96 6.17 100.0 GNL3-211 retained intron liver (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 2228.00 53.87 6.64 100.0 RPL5-205 retained intron liver (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 702.00 16.97 2.09 100.0 RPL5-205 retained intron liver (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 85.00 5.32 0.25 100.0 ZBED9-AS1-201 lncRNA liver (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 11458.00 84.19 34.16 100.0 RPS3A-206 retained intron liver (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 37274.00 94.56 111.11 100.0 COX7C-203 protein coding liver (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 522.00 0.36 1.56 100.0 RACK1-229 protein coding liver (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 37938.18 26.44 113.09 35.91 RACK1-229 protein coding liver (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 97286.88 67.79 290.01 72.17 RACK1-229 protein coding liver (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 2310.00 1.61 6.89 85.56 RACK1-229 protein coding liver (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 124016.00 49.41 369.69 88.94 RACK1-230 retained intron liver (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 120947.00 48.18 360.54 78.6 RACK1-230 retained intron liver (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 131.00 15.98 0.39 100.0 RNA5SP486-201 rRNA pseudogene liver (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1148.00 83.13 3.42 100.0 SCARNA5-201 scaRNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 393.00 0.22 1.17 100.0 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 60210.00 33.18 179.49 95.33 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 17687.00 9.75 52.72 97.71 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 96.00 0.05 0.29 100.0 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 3949.00 2.18 11.77 61.1 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 13790.00 7.60 41.11 78.44 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1272.00 0.70 3.79 100.0 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 18063.00 9.95 53.85 85.96 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 763.00 0.42 2.27 100.0 RNY4-201 misc RNA liver (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 1815.00 1.00 5.41 88.19 RNY4-201 misc RNA liver (Tissue)