ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1981.00 11.75 5.91 48.94 TMEM107-204 protein coding liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 1306.00 7.74 3.89 100.0 TMEM107-204 protein coding liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 43.00 0.25 0.13 100.0 TMEM107-204 protein coding liver (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1742.00 42.17 5.19 100.0 SNHG16-201 lncRNA liver (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1838.00 44.49 5.48 79.43 SNHG16-201 lncRNA liver (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 2134.00 11.38 6.36 100.0 SNHG14-207 lncRNA liver (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 58746.00 94.00 175.12 98.19 SNORD105B-201 snoRNA liver (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 5943.00 50.57 17.72 64.65 SNORD121B-201 snoRNA liver (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 203.00 0.31 0.61 100.0 SNORD127-201 snoRNA liver (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 61716.00 94.54 183.98 99.34 SNORD127-201 snoRNA liver (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 14988.00 83.04 44.68 100.0 SNORD42B-201 snoRNA liver (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 46.00 0.35 0.14 100.0 RNY4P25-201 misc RNA liver (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1093.00 54.14 3.26 100.0 SNORD121A-201 snoRNA liver (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 15271.00 76.87 45.52 92.12 SNORD126-201 snoRNA liver (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 3455.00 17.39 10.30 60.48 SNORD126-201 snoRNA liver (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 18573.00 87.41 55.37 92.33 SNORD124-201 snoRNA liver (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 51.00 3.54 0.15 100.0 SNHG12-201 retained intron liver (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 9023.00 38.50 26.90 95.39 RPL3-212 retained intron liver (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8735.00 37.27 26.04 100.0 RPL3-212 retained intron liver (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 27134.00 97.51 80.89 100.0 SMC1A-204 retained intron liver (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 112782.00 85.37 336.20 98.38 RABGGTB-208 protein coding CDS not defined liver (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 3748.00 34.72 11.17 78.49 DDX39B-219 retained intron liver (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 727.00 6.73 2.17 100.0 DDX39B-219 retained intron liver (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2368.00 21.93 7.06 100.0 DDX39B-219 retained intron liver (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 12203.00 79.34 36.38 100.0 RPS8-206 protein coding CDS not defined liver (Tissue)