ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 1553.00 36.23 4.63 100.0 RNU2-36P-201 snRNA liver (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 87.00 2.03 0.26 100.0 RNU2-36P-201 snRNA liver (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 695.00 0.70 2.07 100.0 SNORD19C-201 snoRNA liver (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 90771.00 91.07 270.59 95.06 SNORD19C-201 snoRNA liver (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2182.00 1.55 6.50 100.0 SNORD12B-201 snoRNA liver (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 728.00 0.52 2.17 100.0 SNORD12B-201 snoRNA liver (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 130082.00 92.26 387.77 97.51 SNORD12B-201 snoRNA liver (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 1653.00 27.57 4.93 100.0 Y_RNA.609-201 misc RNA liver (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 953.00 52.48 2.84 100.0 Y_RNA.612-201 misc RNA liver (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 131537.00 95.20 392.11 99.08 SNORD71-201 snoRNA liver (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 2784.00 2.01 8.30 100.0 SNORD71-201 snoRNA liver (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 697.00 0.50 2.08 100.0 SNORD71-201 snoRNA liver (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 629301.00 69.49 1875.95 87.01 MIR194-2HG-201 lncRNA liver (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 229429.00 25.33 683.93 66.45 MIR194-2HG-201 lncRNA liver (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 73.00 2.41 0.22 100.0 LINC01783-201 lncRNA liver (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 45.00 88.24 0.13 100.0 RPS7P15-201 processed pseudogene liver (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 388.00 4.65 1.16 100.0 SNORD62B-201 snoRNA liver (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1258.00 15.09 3.75 100.0 SNORD62B-201 snoRNA liver (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 3656.00 43.85 10.90 96.44 SNORD62B-201 snoRNA liver (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 498.00 5.97 1.48 100.0 SNORD62B-201 snoRNA liver (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 20.00 0.24 0.06 100.0 SNORD62B-201 snoRNA liver (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 172.00 92.97 0.51 100.0 MRPL32-203 nonsense mediated decay liver (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 1381.00 95.77 4.12 100.0 ENST00000436739 lncRNA liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 43.00 0.25 0.13 100.0 TMEM107-204 protein coding liver (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 132.00 0.78 0.39 57.64 TMEM107-204 protein coding liver (Tissue)