ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 102.00 0.04 0.27 100.0 U2.3-201 snRNA urinary bladder (Tissue)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 11001.93 4.63 29.65 51.09 U2.3-201 snRNA urinary bladder (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 7681.34 3.23 20.70 48.63 U2.3-201 snRNA urinary bladder (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1236.00 0.53 3.33 100.0 U2.6-201 snRNA urinary bladder (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 3325.00 1.49 8.96 67.75 ENST00000619323 lncRNA urinary bladder (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 215137.00 96.33 579.79 98.81 ENST00000619323 lncRNA urinary bladder (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 119.00 11.88 0.32 100.0 SCARNA4-202 scaRNA urinary bladder (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 2569.00 75.69 6.92 100.0 ENST00000625572 miRNA urinary bladder (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 29421.00 95.19 79.29 100.0 ENST00000628177 snoRNA urinary bladder (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 3179.00 94.11 8.57 100.0 ENST00000630615 snoRNA urinary bladder (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 102.00 35.17 0.27 100.0 DMRT2-209 protein coding urinary bladder (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 62.00 21.38 0.17 100.0 DMRT2-209 protein coding urinary bladder (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 808.00 18.17 2.18 100.0 SNORD98-201 snoRNA urinary bladder (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 2970.00 66.79 8.00 100.0 SNORD98-201 snoRNA urinary bladder (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 87660.84 44.94 236.24 47.84 MIR106AHG-201 lncRNA urinary bladder (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 443.14 0.23 1.19 21.87 MIR106AHG-201 lncRNA urinary bladder (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 172.00 0.09 0.46 100.0 MIR106AHG-201 lncRNA urinary bladder (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 1496.10 0.77 4.03 73.85 MIR106AHG-201 lncRNA urinary bladder (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 12656.00 51.37 34.11 100.0 MEG8-222 lncRNA urinary bladder (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 5651.00 22.94 15.23 100.0 MEG8-222 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 14114.00 13.96 38.04 94.93 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 34972.00 34.59 94.25 89.37 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 12428.00 12.29 33.49 100.0 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 8698.00 8.60 23.44 90.66 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 299.00 0.30 0.81 100.0 SNHG14-224 lncRNA urinary bladder (Tissue)