ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 4407.00 4.36 11.88 46.46 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 4083.00 4.04 11.00 74.63 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 2647.00 2.62 7.13 59.67 SNHG14-224 lncRNA urinary bladder (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 936.19 15.93 2.52 68.64 5S_rRNA.20-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 690.00 12.93 1.86 100.0 HSPA9-211 retained intron urinary bladder (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 632.00 11.84 1.70 34.71 HSPA9-211 retained intron urinary bladder (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 245885.00 85.72 662.65 100.0 DNM3OS-205 lncRNA urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 194.00 0.02 0.52 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 2164.00 0.19 5.83 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 2204.00 0.19 5.94 74.46 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 9852.00 0.86 26.55 94.28 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 33.00 0.00 0.09 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 827.00 0.07 2.23 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1438.00 0.13 3.88 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 842171.00 73.36 2269.62 99.83 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1336.00 0.12 3.60 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 3403.00 0.30 9.17 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1494.00 0.13 4.03 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1046.00 0.09 2.82 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2104.00 0.18 5.67 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 706.00 0.06 1.90 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 248.00 0.02 0.67 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 517.00 0.05 1.39 100.0 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 11389.00 0.99 30.69 83.36 GAS5-230 retained intron urinary bladder (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 7809.00 0.68 21.04 100.0 GAS5-230 retained intron urinary bladder (Tissue)