ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 92118.00 55.79 248.25 59.42 VMP1-217 retained intron urinary bladder (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 400.00 0.07 1.08 100.0 C19orf48P-203 retained intron urinary bladder (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 419361.17 70.52 1130.16 76.41 C19orf48P-203 retained intron urinary bladder (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 161013.09 27.08 433.92 27.69 C19orf48P-203 retained intron urinary bladder (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3984.00 0.67 10.74 92.76 C19orf48P-203 retained intron urinary bladder (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 82.00 0.01 0.22 100.0 C19orf48P-203 retained intron urinary bladder (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 5.00 0.00 0.01 100.0 C19orf48P-203 retained intron urinary bladder (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 21.00 52.50 0.06 100.0 ENST00000597420 lncRNA urinary bladder (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 345.00 11.16 0.93 100.0 RPS11-206 retained intron urinary bladder (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 2363.00 76.45 6.37 100.0 RPS11-206 retained intron urinary bladder (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1684898.00 53.01 4540.73 55.07 CARMN-209 lncRNA urinary bladder (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1047.00 26.08 2.82 100.0 ENST00000602478 lncRNA urinary bladder (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 55.00 10.81 0.15 100.0 PPFIA1P1-201 processed pseudogene urinary bladder (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 3690.00 40.09 9.94 100.0 SNORD114-21-201 snoRNA urinary bladder (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 3223.00 35.01 8.69 100.0 SNORD114-21-201 snoRNA urinary bladder (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 395.00 41.75 1.06 100.0 SNORD115-40-201 snoRNA urinary bladder (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 45987.00 98.43 123.93 100.0 MIR98-201 miRNA urinary bladder (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 44432.00 96.70 119.74 100.0 SNORD113-5-201 snoRNA urinary bladder (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 3096.00 93.59 8.34 100.0 MIR15A-201 miRNA urinary bladder (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2219.00 84.34 5.98 100.0 MIR376C-201 miRNA urinary bladder (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1665.00 56.17 4.49 100.0 SNHG21-206 retained intron urinary bladder (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 255.00 30.58 0.69 100.0 SNORD11B-201 snoRNA urinary bladder (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2874.00 73.58 7.75 100.0 SNORD91B-201 snoRNA urinary bladder (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 9139.00 55.03 24.63 66.0 SNORD91A-201 snoRNA urinary bladder (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 21707.00 47.58 58.50 97.37 MIR486-1-201 miRNA urinary bladder (Tissue)