ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 57297.00 40.22 154.41 93.19 RPL17-211 retained intron urinary bladder (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 50324.00 35.33 135.62 96.77 RPL17-211 retained intron urinary bladder (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 9185.00 56.82 24.75 77.99 ENST00000582320 lncRNA urinary bladder (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2595.00 16.05 6.99 100.0 ENST00000582320 lncRNA urinary bladder (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1281.00 7.93 3.45 100.0 ENST00000582320 lncRNA urinary bladder (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 3891.00 6.99 10.49 100.0 RPL17-214 retained intron urinary bladder (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 24592.89 44.16 66.28 53.27 RPL17-214 retained intron urinary bladder (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 26823.80 48.17 72.29 54.52 RPL17-214 retained intron urinary bladder (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 466.00 0.33 1.26 100.0 SNORD43-201 snoRNA urinary bladder (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 136984.00 97.92 369.17 99.97 SNORD43-201 snoRNA urinary bladder (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 231.00 0.17 0.62 100.0 SNORD43-201 snoRNA urinary bladder (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 1060.00 53.05 2.86 100.0 MIR151B-201 miRNA urinary bladder (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 100.00 0.86 0.27 100.0 SNORD3A-201 snoRNA urinary bladder (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 13189.00 89.35 35.54 100.0 SNORD92-201 snoRNA urinary bladder (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 15611.00 72.38 42.07 100.0 NSRP1-214 protein coding urinary bladder (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3825.00 17.73 10.31 85.38 NSRP1-214 protein coding urinary bladder (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 158.00 0.31 0.43 100.0 MIR23AHG-201 lncRNA urinary bladder (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 16339.00 31.85 44.03 92.87 MIR23AHG-201 lncRNA urinary bladder (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 16620.00 32.40 44.79 89.14 MIR23AHG-201 lncRNA urinary bladder (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 4433.00 8.64 11.95 73.78 MIR23AHG-201 lncRNA urinary bladder (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 6310.00 12.30 17.01 82.18 MIR23AHG-201 lncRNA urinary bladder (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 18.00 52.94 0.05 100.0 MIR122HG-201 lncRNA urinary bladder (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 17.00 26.56 0.05 100.0 ODAD3-204 nonsense mediated decay urinary bladder (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 790.00 0.48 2.13 100.0 VMP1-217 retained intron urinary bladder (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 12.00 0.01 0.03 100.0 VMP1-217 retained intron urinary bladder (Tissue)