ENCFF001RMV

Library Details

Organism: Homo Sapiens
Biosample: tongue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGF
Description: Part of ENCODE experiment ENCSR000AGF. The libraries contained in this experiment come from human fetal tongue tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 31.00 32.29 0.06 96.88 MIR302CHG-205 lncRNA tongue (Tissue)
ENST00000688371.3 ENST00000688371.3_458_490_+ 458–490 1.00 1.04 0.00 100.0 MIR302CHG-205 lncRNA tongue (Tissue)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 3.00 3.12 0.01 15.79 MIR302CHG-205 lncRNA tongue (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 22.00 6.40 0.04 100.0 RPSA-216 retained intron tongue (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 7929.00 3.87 15.45 89.56 MIR99AHG-370 lncRNA tongue (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 188523.00 91.98 367.45 98.74 MIR99AHG-370 lncRNA tongue (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 421.00 93.35 0.82 100.0 HPS4-237 retained intron tongue (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 66493.00 88.06 129.60 100.0 MEG8-253 lncRNA tongue (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 12586.00 25.97 24.53 100.0 MEG9-206 lncRNA tongue (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 10954.00 22.60 21.35 100.0 MEG9-206 lncRNA tongue (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 2908.00 6.00 5.67 100.0 MEG9-206 lncRNA tongue (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 221.00 12.24 0.43 100.0 DNAJC5-203 nonsense mediated decay tongue (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1380.00 16.03 2.69 100.0 ENST00000707189 TEC tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 80.00 0.02 0.16 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 182191.09 48.54 355.11 52.72 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 61.00 0.02 0.12 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 809.00 0.22 1.58 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 178601.92 47.58 348.11 51.1 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 10629.00 2.83 20.72 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 201.00 0.05 0.39 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 1821.00 0.49 3.55 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 1720.00 0.46 3.35 100.0 MIR17HG-214 lncRNA tongue (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6235.00 0.69 12.15 100.0 SNHG32-223 lncRNA tongue (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 6128.00 0.68 11.94 100.0 SNHG32-223 lncRNA tongue (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 3216.00 0.36 6.27 100.0 SNHG32-223 lncRNA tongue (Tissue)