ENCFF001RMV

Library Details

Organism: Homo Sapiens
Biosample: tongue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGF
Description: Part of ENCODE experiment ENCSR000AGF. The libraries contained in this experiment come from human fetal tongue tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 583.00 0.06 1.14 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 28148.00 2.86 54.86 85.08 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 15122.00 1.53 29.47 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 52805.00 5.36 102.92 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 52145.00 5.29 101.63 96.38 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 132464.00 13.44 258.18 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 10198.00 1.03 19.88 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 13495.00 1.37 26.30 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 3.00 0.00 0.01 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 91.00 0.01 0.18 100.0 GAS5-230 retained intron tongue (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 750.00 7.70 1.46 100.0 FTX-219 lncRNA tongue (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 5168.00 53.05 10.07 76.06 FTX-219 lncRNA tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 415.00 3.75 0.81 49.11 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 334.00 3.02 0.65 66.67 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 2050.00 18.52 4.00 69.73 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 430.00 3.89 0.84 50.89 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1811.00 16.36 3.53 82.28 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 371.00 3.35 0.72 100.0 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 976.00 8.82 1.90 100.0 CTC1-214 protein coding tongue (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 571.00 5.16 1.11 100.0 CTC1-214 protein coding tongue (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 14297.00 6.58 27.87 73.5 ENST00000651540 lncRNA tongue (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 1780.00 0.82 3.47 99.44 ENST00000651540 lncRNA tongue (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 4786.00 2.20 9.33 100.0 ENST00000651540 lncRNA tongue (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 12953.00 5.96 25.25 48.93 ENST00000651540 lncRNA tongue (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 7252.00 3.34 14.13 100.0 ENST00000651540 lncRNA tongue (Tissue)