ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 33696.00 2.60 69.87 94.77 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 123640.00 9.54 256.37 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 301.00 0.02 0.62 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 3595.00 0.28 7.45 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 13526.00 1.04 28.05 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 306.00 0.02 0.63 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 1761.00 13.79 3.65 100.0 FTX-219 lncRNA diencephalon (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 6354.00 49.76 13.18 87.09 FTX-219 lncRNA diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 134.00 5.22 0.28 52.34 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 16.00 0.62 0.03 14.16 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 152.00 5.92 0.32 45.78 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 122.00 4.75 0.25 47.66 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 515.00 20.05 1.07 90.99 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 50.00 1.95 0.10 100.0 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 73.00 2.84 0.15 100.0 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 454.00 17.67 0.94 100.0 CTC1-214 protein coding diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 461.00 0.82 0.96 63.06 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 1395.00 2.48 2.89 99.29 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 2070.00 3.69 4.29 100.0 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 2057.00 3.66 4.27 59.81 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 1065.00 1.90 2.21 100.0 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 709.00 1.26 1.47 100.0 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 657.00 1.17 1.36 100.0 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 841.00 1.50 1.74 100.0 ENST00000651540 lncRNA diencephalon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1227.00 2.18 2.54 100.0 ENST00000651540 lncRNA diencephalon (Tissue)