ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 180675.00 24.68 374.63 87.63 SNHG14-224 lncRNA diencephalon (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 48753.00 6.66 101.09 51.55 SNHG14-224 lncRNA diencephalon (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2721.64 23.09 5.64 68.11 5S_rRNA.20-201 rRNA pseudogene diencephalon (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 677.00 11.97 1.40 100.0 HSPA9-211 retained intron diencephalon (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 544.00 9.62 1.13 25.61 HSPA9-211 retained intron diencephalon (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 3285.00 90.00 6.81 100.0 DNM3OS-205 lncRNA diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 111.00 0.01 0.23 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1729.00 0.13 3.59 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 713.00 0.06 1.48 73.35 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 7021.00 0.54 14.56 95.88 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 19.00 0.00 0.04 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 227.00 0.02 0.47 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1690.00 0.13 3.50 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1030821.00 79.56 2137.42 99.81 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1382.00 0.11 2.87 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2254.00 0.17 4.67 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2357.00 0.18 4.89 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 2050.00 0.16 4.25 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2143.00 0.17 4.44 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 317.00 0.02 0.66 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 192.00 0.01 0.40 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 359.00 0.03 0.74 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 7668.00 0.59 15.90 79.63 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 4030.00 0.31 8.36 100.0 GAS5-230 retained intron diencephalon (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 27084.00 2.09 56.16 100.0 GAS5-230 retained intron diencephalon (Tissue)