ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 3.00 1.89 0.01 100.0 HCN2-201 protein coding diencephalon (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 45616.00 96.71 94.59 100.0 SLC49A4-201 protein coding diencephalon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 9113.00 29.08 18.90 100.0 ATP5MC3-201 protein coding diencephalon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 69.00 73.40 0.14 100.0 CDC25A-201 protein coding diencephalon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 1099.00 87.99 2.28 100.0 BLOC1S4-201 protein coding diencephalon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 358.00 5.24 0.74 100.0 ATAD5-201 protein coding diencephalon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 168.00 16.02 0.35 100.0 SLITRK5-201 protein coding diencephalon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 24.00 34.78 0.05 100.0 HASPIN-201 protein coding diencephalon (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 715.00 76.88 1.48 100.0 PRR14L-201 protein coding diencephalon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 4840.00 95.92 10.04 100.0 ATG101-201 protein coding diencephalon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 495.00 62.11 1.03 100.0 PRICKLE1-201 protein coding diencephalon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 187.00 98.94 0.39 100.0 MIR133A2-201 miRNA diencephalon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 4.00 16.00 0.01 100.0 PBLD-204 protein coding diencephalon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 702675.00 93.46 1457.00 99.29 MIRLET7BHG-201 lncRNA diencephalon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 22906.00 3.05 47.50 91.17 MIRLET7BHG-201 lncRNA diencephalon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 84.00 1.47 0.17 63.64 MIR375-201 miRNA diencephalon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 5535.00 97.19 11.48 98.79 MIR375-201 miRNA diencephalon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 10874.00 85.49 22.55 100.0 MIR30E-201 miRNA diencephalon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 952.00 7.48 1.97 100.0 MIR30E-201 miRNA diencephalon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 535.00 45.22 1.11 100.0 MIR29A-201 miRNA diencephalon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 2369.00 91.08 4.91 100.0 MIR345-201 miRNA diencephalon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 141185.00 99.15 292.75 100.0 MIR16-2-201 miRNA diencephalon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 2516.00 7.72 5.22 100.0 MIR340-201 miRNA diencephalon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 28533.00 87.56 59.16 100.0 MIR340-201 miRNA diencephalon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 16035.00 82.29 33.25 100.0 MIR107-201 miRNA diencephalon (Tissue)