ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 12409.00 72.36 25.73 100.0 GNL3-211 retained intron diencephalon (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.03 0.00 100.0 RPL5-205 retained intron diencephalon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 4675.00 72.46 9.69 100.0 RPL5-205 retained intron diencephalon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 648.00 10.04 1.34 100.0 RPL5-205 retained intron diencephalon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 331.00 25.31 0.69 100.0 ZBED9-AS1-201 lncRNA diencephalon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 17270.00 92.36 35.81 100.0 RPS3A-206 retained intron diencephalon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 15027.00 95.34 31.16 100.0 COX7C-203 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1033.00 0.42 2.14 100.0 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 54005.78 21.80 111.98 30.7 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 174158.27 70.29 361.12 75.15 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 4465.00 1.80 9.26 84.28 RACK1-229 protein coding diencephalon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 100335.00 85.02 208.05 98.11 RACK1-230 retained intron diencephalon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 16182.00 13.71 33.55 73.8 RACK1-230 retained intron diencephalon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 85.00 22.14 0.18 100.0 RNA5SP486-201 rRNA pseudogene diencephalon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 883.00 82.99 1.83 100.0 SCARNA5-201 scaRNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1111.00 0.15 2.30 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 560183.00 76.63 1161.55 98.2 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 23324.00 3.19 48.36 96.24 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 42.00 0.01 0.09 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1034.00 0.14 2.14 43.26 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 60915.00 8.33 126.31 94.5 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1311.00 0.18 2.72 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 8279.00 1.13 17.17 44.6 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 288.00 0.04 0.60 100.0 RNY4-201 misc RNA diencephalon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 288.00 0.04 0.60 42.79 RNY4-201 misc RNA diencephalon (Tissue)