ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 816.00 0.05 1.69 100.0 RPL21-209 retained intron diencephalon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 132.00 21.50 0.27 100.0 GABRE-209 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 2.00 0.00 0.00 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 291.00 0.14 0.60 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 8522.00 4.21 17.67 82.59 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 637.00 0.31 1.32 56.82 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 165.00 0.08 0.34 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 170330.00 84.16 353.18 98.25 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 1.00 0.00 0.00 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2229.00 1.10 4.62 100.0 RPL13A-212 retained intron diencephalon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 420.00 4.79 0.87 100.0 RPL7A-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 407.00 4.65 0.84 100.0 RPL7A-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5319.00 60.72 11.03 88.37 RPL7A-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 274.00 3.43 0.57 100.0 RN7SL2-201 misc RNA diencephalon (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 276.00 3.46 0.57 57.26 RN7SL2-201 misc RNA diencephalon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 62897.00 73.39 130.42 82.61 NOP56-217 protein coding CDS not defined diencephalon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 5896.00 6.88 12.23 93.23 NOP56-217 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 320.00 0.50 0.66 52.89 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1368.00 2.13 2.84 100.0 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 444.00 0.69 0.92 100.0 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 285.00 0.44 0.59 47.11 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 35174.00 54.65 72.93 89.67 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 19426.00 30.18 40.28 98.1 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 33.00 0.05 0.07 100.0 RABGGTB-213 protein coding CDS not defined diencephalon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 12409.00 72.36 25.73 100.0 GNL3-211 retained intron diencephalon (Tissue)