ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 81281.00 93.40 168.54 99.43 RPL13-207 retained intron diencephalon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2160.00 2.48 4.48 100.0 RPL13-207 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 2375.00 0.37 4.92 92.05 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 91.00 0.01 0.19 100.0 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3687.00 0.57 7.65 54.31 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 3805.00 0.59 7.89 65.99 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 237.00 0.04 0.49 64.05 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1334.00 0.21 2.77 48.42 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 6423.00 0.99 13.32 84.13 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 48008.00 7.40 99.55 56.02 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 245.00 0.04 0.51 100.0 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 532740.00 82.16 1104.64 99.18 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2648.00 0.41 5.49 100.0 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2242.00 0.35 4.65 45.74 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 15.00 0.00 0.03 100.0 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 23796.00 3.67 49.34 83.33 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 303.00 0.05 0.63 100.0 EIF4A2-219 retained intron diencephalon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 28728.00 96.23 59.57 100.0 RPS8-207 protein coding CDS not defined diencephalon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 183.00 8.54 0.38 100.0 RPL7A-206 protein coding CDS not defined diencephalon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 213.00 9.94 0.44 100.0 RPL7A-206 protein coding CDS not defined diencephalon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 874.00 40.78 1.81 100.0 RPL7A-206 protein coding CDS not defined diencephalon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 2854.00 0.19 5.92 100.0 RPL21-209 retained intron diencephalon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 3444.00 0.23 7.14 100.0 RPL21-209 retained intron diencephalon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 816.00 0.05 1.69 100.0 RPL21-209 retained intron diencephalon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 55127.00 3.72 114.31 96.77 RPL21-209 retained intron diencephalon (Tissue)