ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1199.00 14.85 2.49 60.71 TMEM107-204 protein coding diencephalon (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 538.00 6.66 1.12 100.0 TMEM107-204 protein coding diencephalon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 59.00 0.73 0.12 100.0 TMEM107-204 protein coding diencephalon (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 504.00 17.39 1.05 100.0 SNHG16-201 lncRNA diencephalon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1981.00 68.36 4.11 92.92 SNHG16-201 lncRNA diencephalon (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 18592.00 16.77 38.55 100.0 SNHG14-207 lncRNA diencephalon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 180745.00 91.48 374.78 97.34 SNORD105B-201 snoRNA diencephalon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2594.00 28.49 5.38 36.61 SNORD121B-201 snoRNA diencephalon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 462.00 0.32 0.96 100.0 SNORD127-201 snoRNA diencephalon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 138696.00 95.83 287.59 99.3 SNORD127-201 snoRNA diencephalon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 15075.00 95.62 31.26 100.0 SNORD42B-201 snoRNA diencephalon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 203.00 0.44 0.42 100.0 RNY4P25-201 misc RNA diencephalon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 934.00 75.14 1.94 100.0 SNORD121A-201 snoRNA diencephalon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 8706.00 76.08 18.05 91.07 SNORD126-201 snoRNA diencephalon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2387.00 20.86 4.95 66.21 SNORD126-201 snoRNA diencephalon (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 29100.00 91.75 60.34 95.33 SNORD124-201 snoRNA diencephalon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 47.00 3.36 0.10 100.0 SNHG12-201 retained intron diencephalon (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4063.00 28.68 8.42 91.32 RPL3-212 retained intron diencephalon (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 5004.00 35.32 10.38 100.0 RPL3-212 retained intron diencephalon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 47289.00 96.99 98.05 100.0 SMC1A-204 retained intron diencephalon (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 17274.00 89.05 35.82 98.53 RABGGTB-208 protein coding CDS not defined diencephalon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 12022.00 51.28 24.93 75.78 DDX39B-219 retained intron diencephalon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1162.00 4.96 2.41 100.0 DDX39B-219 retained intron diencephalon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1836.00 7.83 3.81 100.0 DDX39B-219 retained intron diencephalon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2398.00 70.43 4.97 100.0 RPS8-206 protein coding CDS not defined diencephalon (Tissue)