ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 2913.00 51.55 6.04 100.0 RNU2-36P-201 snRNA diencephalon (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 76.00 1.34 0.16 100.0 RNU2-36P-201 snRNA diencephalon (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 324.00 0.54 0.67 100.0 SNORD19C-201 snoRNA diencephalon (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 57650.00 96.70 119.54 99.29 SNORD19C-201 snoRNA diencephalon (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2257.00 1.14 4.68 100.0 SNORD12B-201 snoRNA diencephalon (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 202.00 0.10 0.42 100.0 SNORD12B-201 snoRNA diencephalon (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 189817.00 95.48 393.59 99.0 SNORD12B-201 snoRNA diencephalon (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 34871.00 57.28 72.31 100.0 Y_RNA.609-201 misc RNA diencephalon (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 1104.00 26.24 2.29 100.0 Y_RNA.612-201 misc RNA diencephalon (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 130879.00 96.35 271.38 99.46 SNORD71-201 snoRNA diencephalon (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1359.00 1.00 2.82 100.0 SNORD71-201 snoRNA diencephalon (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 855.00 0.63 1.77 100.0 SNORD71-201 snoRNA diencephalon (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 8737.00 78.97 18.12 91.72 MIR194-2HG-201 lncRNA diencephalon (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 1595.00 14.42 3.31 55.75 MIR194-2HG-201 lncRNA diencephalon (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 17.00 0.61 0.04 100.0 LINC01783-201 lncRNA diencephalon (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 25.00 83.33 0.05 100.0 RPS7P15-201 processed pseudogene diencephalon (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 578.00 9.49 1.20 100.0 SNORD62B-201 snoRNA diencephalon (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1073.00 17.61 2.22 100.0 SNORD62B-201 snoRNA diencephalon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1195.00 19.62 2.48 83.04 SNORD62B-201 snoRNA diencephalon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 451.00 7.40 0.94 100.0 SNORD62B-201 snoRNA diencephalon (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 63.00 1.03 0.13 100.0 SNORD62B-201 snoRNA diencephalon (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 61.00 93.85 0.13 100.0 MRPL32-203 nonsense mediated decay diencephalon (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 2590.00 97.48 5.37 100.0 ENST00000436739 lncRNA diencephalon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 59.00 0.73 0.12 100.0 TMEM107-204 protein coding diencephalon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 26.00 0.32 0.05 50.0 TMEM107-204 protein coding diencephalon (Tissue)