ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 19939.00 76.79 41.34 98.24 RNY4P18-201 misc RNA diencephalon (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 95489.00 96.15 198.00 100.0 SNORD90-201 snoRNA diencephalon (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 802.00 0.81 1.66 15.69 SNORD90-201 snoRNA diencephalon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1455.00 0.94 3.02 100.0 SNORD69-201 snoRNA diencephalon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1668.00 1.08 3.46 100.0 SNORD69-201 snoRNA diencephalon (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1515.00 0.98 3.14 100.0 SNORD69-201 snoRNA diencephalon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 144417.00 93.33 299.45 100.0 SNORD69-201 snoRNA diencephalon (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1875.00 56.10 3.89 66.49 SNORD70-201 snoRNA diencephalon (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 3100.00 67.46 6.43 79.61 B4GALNT2-202 protein coding diencephalon (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 254.00 5.53 0.53 100.0 B4GALNT2-202 protein coding diencephalon (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 2199.00 90.83 4.56 100.0 NDE1-202 protein coding diencephalon (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 51.00 85.00 0.11 100.0 MIR208B-201 miRNA diencephalon (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 522.00 73.62 1.08 100.0 MIR450B-201 miRNA diencephalon (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 702.00 60.21 1.46 100.0 MIR887-201 miRNA diencephalon (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 15441.00 91.78 32.02 100.0 MIR889-201 miRNA diencephalon (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 5657.00 82.44 11.73 100.0 SNORD111-201 snoRNA diencephalon (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2384.00 60.35 4.94 79.97 SNORD88A-201 snoRNA diencephalon (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 415.00 95.84 0.86 100.0 MIR548K-201 miRNA diencephalon (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 570.00 58.46 1.18 100.0 MIR320B2-201 miRNA diencephalon (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 7035.00 95.17 14.59 100.0 MIR1271-201 miRNA diencephalon (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 368.00 0.25 0.76 100.0 SNORD100-201 snoRNA diencephalon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 141050.00 95.98 292.47 100.0 SNORD100-201 snoRNA diencephalon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1564.00 1.06 3.24 100.0 SNORD100-201 snoRNA diencephalon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 295.00 0.20 0.61 100.0 SNORD100-201 snoRNA diencephalon (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2054.00 73.67 4.26 100.0 SNORD111B-201 snoRNA diencephalon (Tissue)