ENCFF001RMQ

Library Details

Organism: Homo Sapiens
Biosample: lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFW
Description: Part of ENCODE experiment ENCSR000AFW. The libraries contained in this experiment come from human fetal lung tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 1159.00 24.69 1.74 100.0 GABRE-209 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 174.00 0.04 0.26 30.96 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 5943.00 1.39 8.95 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 336248.00 78.84 506.21 98.11 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 39332.00 9.22 59.21 79.01 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 208.00 0.05 0.31 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 9.00 0.00 0.01 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 14.00 0.00 0.02 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 686.00 0.16 1.03 100.0 RPL13A-212 retained intron lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 671.00 6.15 1.01 100.0 RPL7A-207 protein coding CDS not defined lung (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5843.00 53.52 8.80 84.52 RPL7A-207 protein coding CDS not defined lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 342.00 3.13 0.51 100.0 RPL7A-207 protein coding CDS not defined lung (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 760.00 2.03 1.14 42.15 RN7SL2-201 misc RNA lung (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1596.00 4.26 2.40 100.0 RN7SL2-201 misc RNA lung (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 24371.00 16.54 36.69 92.0 NOP56-217 protein coding CDS not defined lung (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 97320.00 66.05 146.51 86.48 NOP56-217 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1294.00 0.96 1.95 100.0 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 906.00 0.67 1.36 100.0 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 457.00 0.34 0.69 45.61 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 76051.00 56.16 114.49 92.86 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 41285.00 30.49 62.15 94.59 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 273.00 0.20 0.41 100.0 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 545.00 0.40 0.82 54.39 RABGGTB-213 protein coding CDS not defined lung (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 5475.00 15.50 8.24 100.0 GNL3-211 retained intron lung (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 25966.00 73.50 39.09 100.0 GNL3-211 retained intron lung (Tissue)