ENCFF001RMJ

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12.00 0.00 0.03 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 12925.00 4.90 33.61 84.3 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 220.00 0.08 0.57 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 2130.00 0.81 5.54 74.35 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 519.00 0.20 1.35 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 3009.00 1.14 7.82 100.0 RPL13A-212 retained intron skin of body (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 1122.00 23.70 2.92 82.2 RPL7A-207 protein coding CDS not defined skin of body (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 53.00 1.12 0.14 100.0 RPL7A-207 protein coding CDS not defined skin of body (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1139.00 24.05 2.96 100.0 RPL7A-207 protein coding CDS not defined skin of body (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 944.00 4.88 2.45 100.0 RN7SL2-201 misc RNA skin of body (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 723.00 3.74 1.88 50.84 RN7SL2-201 misc RNA skin of body (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 12486.00 72.40 32.46 85.51 NOP56-217 protein coding CDS not defined skin of body (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 627.00 3.64 1.63 69.74 NOP56-217 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 925.00 1.00 2.41 70.83 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 46713.00 50.60 121.46 89.11 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 30589.00 33.13 79.53 96.86 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 381.00 0.41 0.99 29.17 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 351.00 0.38 0.91 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 79.00 0.09 0.21 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 447.00 0.48 1.16 100.0 RABGGTB-213 protein coding CDS not defined skin of body (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 3485.00 13.03 9.06 100.0 GNL3-211 retained intron skin of body (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 18674.00 69.83 48.55 100.0 GNL3-211 retained intron skin of body (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 9381.00 80.04 24.39 100.0 RPL5-205 retained intron skin of body (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 1.00 0.01 0.00 50.0 RPL5-205 retained intron skin of body (Tissue)