ENCFF001RMI

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle tissue (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFZ
Description: Part of ENCODE experiment ENCSR000AFZ. The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 2493.00 81.68 10.81 100.0 SNHG6-204 retained intron skeletal muscle tissue (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 18351.00 50.17 79.59 84.92 MIR151A-201 miRNA skeletal muscle tissue (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 14043.00 38.39 60.90 100.0 MIR151A-201 miRNA skeletal muscle tissue (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 633.00 92.27 2.75 100.0 DENND3-221 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 409.00 0.27 1.77 100.0 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 20.00 0.01 0.09 100.0 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 25.00 0.02 0.11 86.21 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 5.00 0.00 0.02 100.0 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 6.00 0.00 0.03 75.0 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 946.00 0.63 4.10 77.41 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 236.00 0.16 1.02 100.0 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 2.00 0.00 0.01 25.0 WDR74-204 protein coding skeletal muscle tissue (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1789.00 76.91 7.76 100.0 HSPA8-211 retained intron skeletal muscle tissue (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 355.00 17.85 1.54 100.0 SCARNA9-201 lncRNA skeletal muscle tissue (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 76495.00 96.58 331.75 100.0 TAF1D-215 retained intron skeletal muscle tissue (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 298.00 0.38 1.29 100.0 TAF1D-215 retained intron skeletal muscle tissue (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 120.00 12.05 0.52 100.0 HSPA8-215 retained intron skeletal muscle tissue (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 633.00 63.55 2.75 100.0 HSPA8-215 retained intron skeletal muscle tissue (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3.00 0.30 0.01 100.0 HSPA8-215 retained intron skeletal muscle tissue (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1099.00 44.69 4.77 100.0 RPS2-215 retained intron skeletal muscle tissue (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 74267.00 83.66 322.09 84.76 ENST00000548801 lncRNA skeletal muscle tissue (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 313.00 11.77 1.36 100.0 ENST00000554988 lncRNA skeletal muscle tissue (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 540.00 20.31 2.34 100.0 ENST00000554988 lncRNA skeletal muscle tissue (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 104.00 3.91 0.45 100.0 ENST00000554988 lncRNA skeletal muscle tissue (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 333.00 0.74 1.44 100.0 SNHG14-220 retained intron skeletal muscle tissue (Tissue)