ENCFF001RMG

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1078.00 61.11 4.58 100.0 SNORD121A-201 snoRNA parietal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1897.00 68.02 8.06 84.16 SNORD126-201 snoRNA parietal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 728.00 26.10 3.09 68.23 SNORD126-201 snoRNA parietal lobe (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 20660.00 90.56 87.81 94.31 SNORD124-201 snoRNA parietal lobe (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 4.00 0.61 0.02 100.0 SNHG12-201 retained intron parietal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 4058.00 33.20 17.25 89.84 RPL3-212 retained intron parietal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3858.00 31.56 16.40 100.0 RPL3-212 retained intron parietal lobe (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 7921.00 95.83 33.67 100.0 SMC1A-204 retained intron parietal lobe (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 64714.00 90.14 275.06 98.73 RABGGTB-208 protein coding CDS not defined parietal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 6075.00 40.00 25.82 79.89 DDX39B-219 retained intron parietal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1858.00 12.23 7.90 100.0 DDX39B-219 retained intron parietal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1445.00 9.51 6.14 100.0 DDX39B-219 retained intron parietal lobe (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 11592.00 83.94 49.27 100.0 RPS8-206 protein coding CDS not defined parietal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 966.00 1.16 4.11 100.0 RPL13-207 retained intron parietal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 79568.00 95.63 338.20 99.79 RPL13-207 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 259167.00 31.92 1101.57 88.83 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 686.00 0.08 2.92 100.0 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 504720.00 62.17 2145.27 98.51 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 1987.00 0.24 8.45 100.0 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1158.00 0.14 4.92 57.24 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 87.00 0.01 0.37 100.0 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5995.00 0.74 25.48 84.76 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1859.00 0.23 7.90 42.04 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2712.00 0.33 11.53 56.15 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1861.00 0.23 7.91 38.57 EIF4A2-219 retained intron parietal lobe (Tissue)