ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 241833.00 86.38 511.93 100.0 SNHG29-232 lncRNA occipital lobe (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 225.00 0.08 0.48 100.0 SNHG29-232 lncRNA occipital lobe (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 299.00 0.11 0.63 100.0 SNHG29-232 lncRNA occipital lobe (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 363.00 0.13 0.77 100.0 SNHG29-232 lncRNA occipital lobe (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 9576.00 3.42 20.27 100.0 SNHG29-232 lncRNA occipital lobe (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 24020.00 8.58 50.85 100.0 SNHG29-232 lncRNA occipital lobe (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 820.00 0.37 1.74 100.0 SNHG14-234 lncRNA occipital lobe (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 95196.00 43.14 201.52 95.57 SNHG14-234 lncRNA occipital lobe (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 839.00 0.38 1.78 100.0 SNHG14-234 lncRNA occipital lobe (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 15477.00 7.01 32.76 100.0 SNHG14-234 lncRNA occipital lobe (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 31351.00 14.21 66.37 100.0 SNHG14-234 lncRNA occipital lobe (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 31412.00 14.23 66.49 95.19 SNHG14-234 lncRNA occipital lobe (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 3049.00 4.81 6.45 61.53 ENST00000655317 lncRNA occipital lobe (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 10787.00 17.01 22.83 100.0 ENST00000655317 lncRNA occipital lobe (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 3884.00 6.13 8.22 40.4 ENST00000655317 lncRNA occipital lobe (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 3254.00 5.13 6.89 100.0 ENST00000655317 lncRNA occipital lobe (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 720.00 4.96 1.52 87.8 LINC01962-202 lncRNA occipital lobe (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 12346.00 85.02 26.13 100.0 LINC01962-202 lncRNA occipital lobe (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 213.00 1.47 0.45 100.0 LINC01962-202 lncRNA occipital lobe (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 36066.00 29.02 76.35 92.18 SNHG14-241 lncRNA occipital lobe (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 13742.00 96.08 29.09 100.0 MEG8-228 lncRNA occipital lobe (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 5653.00 24.87 11.97 100.0 SNHG14-254 lncRNA occipital lobe (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 8405.00 18.78 17.79 100.0 SNHG14-261 lncRNA occipital lobe (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 19848.00 44.35 42.02 89.32 SNHG14-261 lncRNA occipital lobe (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 3.00 0.15 0.01 100.0 LIMD1-AS1-204 lncRNA occipital lobe (Tissue)