ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 329.00 0.05 0.70 100.0 GAS5-230 retained intron occipital lobe (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 1336.00 15.03 2.83 100.0 FTX-219 lncRNA occipital lobe (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 3641.00 40.97 7.71 82.15 FTX-219 lncRNA occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 199.00 9.51 0.42 59.58 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 7.00 0.33 0.01 5.65 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 109.00 5.21 0.23 52.4 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 135.00 6.45 0.29 40.42 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 343.00 16.39 0.73 90.5 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 34.00 1.62 0.07 100.0 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 32.00 1.53 0.07 100.0 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 529.00 25.27 1.12 100.0 CTC1-214 protein coding occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1486.00 3.56 3.15 77.96 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 1266.00 3.03 2.68 97.69 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 2102.00 5.03 4.45 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 2221.00 5.32 4.70 58.23 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 204.00 0.49 0.43 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 383.00 0.92 0.81 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 315.00 0.75 0.67 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 638.00 1.53 1.35 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 393.00 0.94 0.83 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 5783.00 13.84 12.24 49.61 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 3707.00 8.87 7.85 100.0 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 14379.00 34.41 30.44 85.36 ENST00000651540 lncRNA occipital lobe (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 15106.00 1.18 31.98 100.0 MIRLET7A1HG-203 lncRNA occipital lobe (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 5037.00 93.11 10.66 100.0 MEG8-225 lncRNA occipital lobe (Tissue)