ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2383.00 5.55 6.80 100.0 RPL17-214 retained intron diencephalon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 20451.61 47.60 58.35 57.49 RPL17-214 retained intron diencephalon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 18071.84 42.06 51.56 47.31 RPL17-214 retained intron diencephalon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 111.00 0.10 0.32 100.0 SNORD43-201 snoRNA diencephalon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 114838.00 98.91 327.62 99.97 SNORD43-201 snoRNA diencephalon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 124.00 0.11 0.35 100.0 SNORD43-201 snoRNA diencephalon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 593.00 47.03 1.69 100.0 MIR151B-201 miRNA diencephalon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 808.00 5.17 2.31 100.0 SNORD3A-201 snoRNA diencephalon (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 15500.00 92.39 44.22 100.0 SNORD92-201 snoRNA diencephalon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 11241.00 60.98 32.07 100.0 NSRP1-214 protein coding diencephalon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5516.00 29.92 15.74 87.25 NSRP1-214 protein coding diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 60.00 1.25 0.17 100.0 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1139.00 23.73 3.25 91.27 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1341.00 27.94 3.83 84.45 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1050.00 21.88 3.00 85.23 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 381.00 7.94 1.09 54.98 MIR23AHG-201 lncRNA diencephalon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 21.00 37.50 0.06 100.0 ODAD3-204 nonsense mediated decay diencephalon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 50.00 0.37 0.14 100.0 VMP1-217 retained intron diencephalon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 3.00 0.02 0.01 100.0 VMP1-217 retained intron diencephalon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 7951.00 58.17 22.68 61.81 VMP1-217 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 243.00 0.05 0.69 100.0 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 380463.66 76.67 1085.43 82.2 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 109178.42 22.00 311.48 22.36 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 2461.00 0.50 7.02 91.35 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 35.00 0.01 0.10 100.0 C19orf48P-203 retained intron diencephalon (Tissue)