ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1.00 0.51 0.00 100.0 HCN2-201 protein coding diencephalon (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 22566.00 97.07 64.38 100.0 SLC49A4-201 protein coding diencephalon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 5914.00 22.00 16.87 100.0 ATP5MC3-201 protein coding diencephalon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 79.00 83.16 0.23 100.0 CDC25A-201 protein coding diencephalon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 3806.00 88.76 10.86 100.0 BLOC1S4-201 protein coding diencephalon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 463.00 6.49 1.32 100.0 ATAD5-201 protein coding diencephalon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 222.00 22.07 0.63 100.0 SLITRK5-201 protein coding diencephalon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 14.00 34.15 0.04 100.0 HASPIN-201 protein coding diencephalon (Tissue)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 383.00 62.89 1.09 100.0 PRR14L-201 protein coding diencephalon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 3374.00 95.83 9.63 100.0 ATG101-201 protein coding diencephalon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 337.00 55.98 0.96 100.0 PRICKLE1-201 protein coding diencephalon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 262.00 97.04 0.75 98.87 MIR133A2-201 miRNA diencephalon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 7.00 21.88 0.02 100.0 PBLD-204 protein coding diencephalon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 319332.00 92.40 911.02 99.14 MIRLET7BHG-201 lncRNA diencephalon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 11944.00 3.46 34.08 92.19 MIRLET7BHG-201 lncRNA diencephalon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 20.00 1.12 0.06 50.0 MIR375-201 miRNA diencephalon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 1752.00 97.71 5.00 98.76 MIR375-201 miRNA diencephalon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 7797.00 78.93 22.24 100.0 MIR30E-201 miRNA diencephalon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 1361.00 13.78 3.88 100.0 MIR30E-201 miRNA diencephalon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 587.00 48.67 1.67 100.0 MIR29A-201 miRNA diencephalon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 1348.00 92.14 3.85 100.0 MIR345-201 miRNA diencephalon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 61216.00 98.85 174.64 100.0 MIR16-2-201 miRNA diencephalon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 2445.00 7.63 6.98 100.0 MIR340-201 miRNA diencephalon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 28152.00 87.86 80.32 100.0 MIR340-201 miRNA diencephalon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 15024.00 84.41 42.86 100.0 MIR107-201 miRNA diencephalon (Tissue)