ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3.00 0.00 0.01 100.0 C19orf48P-203 retained intron diencephalon (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 2.00 40.00 0.01 100.0 ENST00000597420 lncRNA diencephalon (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 214.00 6.66 0.61 100.0 RPS11-206 retained intron diencephalon (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 2441.00 75.93 6.96 100.0 RPS11-206 retained intron diencephalon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 25145.00 70.83 71.74 72.67 CARMN-209 lncRNA diencephalon (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2002.00 38.80 5.71 100.0 ENST00000602478 lncRNA diencephalon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 8.00 7.92 0.02 100.0 PPFIA1P1-201 processed pseudogene diencephalon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2552.00 36.80 7.28 100.0 SNORD114-21-201 snoRNA diencephalon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 2274.00 32.79 6.49 100.0 SNORD114-21-201 snoRNA diencephalon (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 64664.00 45.99 184.48 100.0 SNORD115-40-201 snoRNA diencephalon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 13249.00 97.40 37.80 100.0 MIR98-201 miRNA diencephalon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 89356.00 97.02 254.92 100.0 SNORD113-5-201 snoRNA diencephalon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 1386.00 94.48 3.95 100.0 MIR15A-201 miRNA diencephalon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 717.00 86.28 2.05 100.0 MIR376C-201 miRNA diencephalon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1258.00 58.24 3.59 100.0 SNHG21-206 retained intron diencephalon (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 53.00 16.16 0.15 100.0 SNORD11B-201 snoRNA diencephalon (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1704.00 77.00 4.86 100.0 SNORD91B-201 snoRNA diencephalon (Tissue)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 645.00 66.29 1.84 100.0 MIR219A2HG-201 lncRNA diencephalon (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 6526.00 57.34 18.62 66.46 SNORD91A-201 snoRNA diencephalon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 17142.00 46.91 48.90 97.14 MIR486-1-201 miRNA diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 9124.00 15.25 26.03 72.18 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1084.00 1.81 3.09 100.0 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 290.00 0.48 0.83 100.0 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 34239.00 57.24 97.68 80.51 NOP56-219 retained intron diencephalon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2807.00 18.96 8.01 42.29 RNA5-8SN2-201 rRNA diencephalon (Tissue)